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Visual Chemistry Encyclopedia 6 files - 711sheets
More productive and interesting learning
 
File 6: Organic
5x Hybridization of carbon
6x Polymerisation
4x Molecular Orbitals in carbon composition
9x Enolization and condensation
3x HOMO-LUMO interactions
8x Condensation & acetal formation
3x Allotropy of carbon
5x Esters
4x Conformations of cycloalkanes
4x Essential elements/reactions/DNA
10x Stereochemistry/steric hindrance
8x Biosynthesis
5x Reaction profile diagrams
5x Structure of proteins/fats/glyceride
2x Electron density maps
4x pH & yield of acid-base forms/polarity
6x Redox reactions 5x additlon react.
3x Mass spectrometry
10x Nucleophilic and electrophilic subst.
7x IR and UV absorption spectroscopy
3x Rearrangement reactions
15x H Spectra 1Ox 13C spectra



Chemical Bonding and the Carbon Atom

   
1
Hybridization of Carbon
1.1
Formation of sp3 hybrid orbitals of carbon (O1)
1.2
Formation of sp2 hybrid orbitals of carbon (O2)
1.3
Molecular orbital picture of pi bond in ethylene (O 3)
1.4
Sigma bond skeleton of acetylene (O 4)
1.5
The pi bonds in acetylene (O 5)
   
2 Molecular Orbitals in Carbon Compounds
2.1 An orbital picture of 1,3-butadiene (O 104)
2.2 The four molecular orbitals of 1,3-butadiene (O 105)
2.3 Combinations of 2p atomic orbitals of benzene (O 111)
   
3 HOMO-LUMO Interactions
3.1 HOMO & LUMO of (E)-2-butene in ground state (O 142)
3.2 Excited state and ground state of (E)-2-butene (O 143)
3.3 Interaction HOMO of cyclopentadiene & LUMO of maleic anhydride (O 144)
   
4 Allotropy of Carbon
4.1 3-D structures of graphite and diamond (O 113)
4.2 Buckminsterfullerene and a soccer ball (O 114)
4.3 X-ray determination of C60 - osmium tetroxide adduct with two 4-tert-butylpyridine molecules (O 115)
   
   
Stereochemistry of Carbon Compounds
   
5 Conformations of Cycloalkanes
5.1 Chair conformations of methylcyclohexane (O 17)
5.2 Chair conformations of tert-butylcyclohexane (O 18)
5.3 Planar and envelope conformations of cyclopentane (O 16)
5.4 The anomeric effect (O 129)
 
 
6 Stereochemistry / Steric Hindering
6.1 Fischer projection formula (O 125)
6.2 Mirror-image isomers in chlorobutane (O 19)
6.3 Planes of symmetry in different conformation of butane; lack of symmetry in 2-chlorobutane (O 20)
6.4 Formation of enantiomers (O 21)
6.5 Enantiomeric bromonium ions from (Z)-2-pentene (O 30)
6.6 Reaction enantiomeric bromonium ions - bromide ion (O 31)
6.7 The mutarotation of glucose (O 127)
6.8 The mutarotation of fructose (O 128)
6.9 Stereoselective addition of bromine to an alkene (O 29)
   
   
Reaction Profile Diagrams
 
7 Reaction Profile Diagrams
7.1 Reaction of chloromethane with hydroxide ion (O 9)
7.2 Conversion of propene & HBr to isopropyl bromide (O 11)
7.3 Hydrogenation reaction with and without catalyst (O 27)
   
   
Electron Density Maps
 
8 Electron Density Maps
8.1 Valence electrons chloromethane & hydroxide ion (O 8)
8.2 Valence electrons propene & hydrogen bromide (O 10)
   
9 Redox Reactions
9.1 Oxidation of an alkene by permanganate ion (O 33)
9.2 Reduction of a carbonyl group (O 73)
9.3 Formation of hydroperoxide (O 118)
9.4 Reduction of an alkyne by sodium in ammonia (O 34)
   
   
Addition and Substitution
 
10 Addition Reactions
10.1 A hydration reaction (O 26)
10.2 Formation of the cyclopentylbromonium ion (O 28)
10.3 Reaction of an alkene with ozone (O 32)
10.4 Addition of a nucleophile to an alpha, beta-unsaturated carbonyl compound (O 109)
10.5 Electrophilic addition to a diene (O 106)
10.6 Reaction enantiomeric bromonium - bromide ions (O 31)
   
11 Nucleophilic and Electrophilic Substitutions
11.1 Conversion alcohol to alkyl halide by thionyl chloride (O 66)
11.2 An electrophilic aromatic substitution reaction (O 116)
11.3 Nucleophilic aromatic substitution (O 117)
11.4 Comparison of the free energies of activation for bimolecular substitution reactions (O 22)
11.5 Stages of the ionization of 1-chloro-1-phenylethane (O 24)
11.6 Conversion alcohol to alkyl halide by hydrogen bromide (O 65)
   
   
Rearrangements Polymerisation
 
12 Rearrangement Reactions
12.1 Substitution reactions (O 6)
12.2 A biological methyl transfer reaction (O 7)
12.3 The McLafferty rearrangement (O 64)
 
13 Polymerisation
13.1 Three-dimensional representations af a dendrimer (O 141)
13.2 A free-radical polymerization reaction (O 119)
13.3 Anionic polymerization of an alkene (O 137)
13.4 Cationic polymerization of a cyclic ether (O 138)
13.5 Polymerization with a Ziegler-Natta catalyst (O 139)
13.6 The solid-phase synthesis of a peptide (O 132)
   


 
 
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Reactions of carbonyl group
   
14 Enolization and Condensation
14.1 Base-initiated enolization of acetone (O 92)
14.2 Reaction of an enolate ion with carbonyl compound (O 97)
14.3 Addition organometallic reagent with carbonyl compound (O74)
14.4 Base-catalyzed enolization reaction of a dione (O 93)
14.5 Decarboxylation of a beta-ketoacid (O 98)
14.6 Formation heterocycle from a 1,4-dicarbonyl compound (O 121)
   
   
   
15 Condensation and Acetal Formation
15.1 The Claisen condensation (O 102)
15.2 The Dieckmann condensation (O 103)
15.3 The Wittig reaction (O 110)
15.4 Formation of a diazonium ion (O 120)
15.5 Formation of a hemiacetal (O 75)
15.6 Conversion of a hemiacetal to an acetal (O 76)
15.7 Alkylation of an enolate ion (O 96)
   
   
Esters
   
16 Esters
16.1 Acid-catalyzed hydrolysis of an ester (O 82)
16.2 Basic hydrolysis of an ester (O 83)
16.3 Esterification (O 84)
   

 

Biochemistry
   
17

Essential Elements / Reactions / DNA

17.1 The double helix (O 122)
17.2 A schematic representation of replication of DNA (O 123)
17.3 Biological leaving groups (O 25)
   
18 Biosynthesis
18.1 A retroaldol reaction in glycolysis (O 101)
18.2 Biosynthesis of glucose-6-phosphate (O 130)
18.3 Formation of phosphoenolpyruvate from 2-phosphoglyceric acid (O 95)
   
19 Structure of Proteins / Fats / Glyceride
19.1 The alpha-helix, showing hydrogen bonding (O 133)
19.2 6 19.2 Pleated sheet conformation of some proteins (O)
19.3 Structures of fatty acids (O 86)
19.4 Structure of a triglyceride (O 87)
19.5 A cross section of sodium stearate micelle solubilizing a particle of grease (O 88)
   
20 pH and Yield of Acid-Base Forms - Polarity and Activity
20.1 Amounts of acid-base forms of alanine as pH varies (O 90)
20.2 Amounts of acid-base forms of lysine as pH varies (O 91)
20.3 Interaction of ethanol with the active site of an enzyme (O 124)
20.4 Amounts of acid-base forms of succinic as pH varies (O 89)
   
   
Analysis
   
21

Mass Spectrometry

21.1 Mass spectra of acetone and acetaldehyde (O 61)
21.2 Mass spectrum of methyl bromide (O 62)
21.3 Mass spectrum of methyl chloride (O 63)
   
22 IR and UV Absorption Spectroscopy
22.1 Infrared regions for different types of bonds (O 55)
22.2 Infrared spectra of 1-hexyne, 1-hexene, & 1-hexanol (O 56)
22.3 Infrared spectra of butanal and 2-butanone (O 57)
22.4 Infrared spectrum of hexanoic acid (O 59)
22.5 Infrared spectra of methyl hexanoate & ethyl benzoate (O 60)
22.6 Ultraviolet spectra of 3-penten-2-one and 4-methy-3-penten- 2-one in ethanol (O 54)
22.7 The infrared spectra of 2-cyclohexen-1-one and 1- phenyl-1- butanone (O 58)
   
23 1H Spectra
23.1 1,1,2-trichloroethane (O 47)
23.2 The interactions possible between the magnetic moments of the nuclei of the hydrogen atoms (O 46)
23.3 The coupling between three-bond neighour hydrogen atoms on adjacent carbon atoms (O 48)
23.4 Cyclohexene and toluene (O 42)
23.5 Benzene and 1,3,5,7-cyclooctatetraene (O 112)
23.6 Vinyl acetate (O 50)
23.7 Analysis of the spin-spin coupling in vinyl acetate (O 51)
23.8 2-Bromopropane and 1-bromopropane (O 49)
   
24 13C Spectra
24.1 Proton nuclear methyl acetate (O 35)
24.2 1-Bromo-2-methylpropane (O 15)
24.3 Proton decoupled and coupled 1,1,2-trichloroethane (O 45)
24.4 1,1-Dichloroethane (O 14)
24.5 1,2-Dichloroethane (O 13)
 
 
 
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